Qtl cartographer 2.5

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August undefined, 2024

http://gaow.github.io/genetic-analysis-software/q/qtl-cartographer/ WebApr 12, 2024 · We used QTL Cartographer (version 1.17j) software (NCSU, Raleigh, NC, USA) for QTL analysis. The Composite Interval Mapping (CIM) method with 95% confidence intervals and 1.0 cM walking speed precision was chosen for QTL mapping. Putative QTL were declared after 1000 permutation trials using a log-likelihood (LOD) threshold of 2.5.

(PDF) QTL Cartographer, version 1.15 - ResearchGate

Web以育性转换表现为'长光高温下可育,短光低温下不育'反(向)光、温敏核不育种质5021S为材料,5021S与轮回422杂交组合F2作为遗传群体进行育性相关基因的QTL定位,利用124对SSR标记构建了一张全长1912.3 cM平均图距为14.98 cM的饱和分子连锁图谱.利 … WebNov 11, 2014 · The Windows version of QTL Cartographer V2.5 [ 36] was used to conduct composite interval mapping (CIM) analysis based on model 6. The forward and backward regression method was used as a cofactor to control the genetic background while testing a position in the genome. The walking speed chosen for the QTL analysis was 2.0°CM. chopper bicycles for kids

Identification of candidate genes for aphid resistance in upland …

WebMar 24, 2024 · QTL mapping Both the phenotypic values obtained from the three environments (E1, E2, and E3) and their average values (AV) were used for QTL mapping … WebQTL Cartographer Record added by Jurg Ott (the original Rockefeller list) Version Window version 2.5 (September 2006) Description A program to map quantitative traits sing a map of molecular markers. Author Christopher J. Basten Bruce S. Weir Zhao-Bang Zeng Shengchu Wang (Dept Statistics, North Carolina State University); URL WebWindows QTL Cartographer V2.5_011 Release Date: 01 - AUG - 2012 Shengchu Wang, Christopher J. Basten and Zhao-Bang Zeng Program in Statistical Genetics, North Carolina … chopper bikes at walmart

A Reference Manual and Tutorial for QTL Mapping - ResearchGate

Windows QTL Cartographer 2.5 User Manual - ReadkonG

WebJun 1, 2024 · QTL were detected with Windows QTL Cartographer 2.5 software [30], at a threshold LOD score set to 2.5 using 1000 permutation tests. ... QTL thus identified were designated identified QTL. The identified QTL 18WH-OC-1 represents seeds sown in Wuhan in 2024, OC stands for oil content, and 1 represents the serial number of the QTL in the … WebThe results of several QTL mapping studies have indicated that there are only few major genes, which interact with numerous minor genes and environment to give continuous trait phenotype characteristic of quantitative traits. Thus … chopper bobber brake anchorWebJan 21, 2024 · QTL mapping. The WinQTL Cartographer 2.5 with the CIM algorithm was used to identify the QTLs for eight traits in the four F 2 populations. As a result, a total of 50 QTLs with R 2 of 0.1–59.24% were identified, 27 were for fiber quality traits and 16 were for yield traits. A total of 23, 4, 8, ... chopper blender toys walmart

"WebApr 18, 2024 · For QTL analysis with WinQTL cartographer 2.5, a permutation test (parameter 1000) was used to determine the QTL with a LOD threshold of 2.5. CIM was performed using Model 6, a value of 5 for ... " - Qtl cartographer 2.5

Qtl cartographer 2.5

WinQTLCart - North Carolina State University

WebStep 3—Analyzing data using QTL Mapping Methods With WinQTLCart able to view the data, you can then select any of six different analysis methods. The end result for some of these methods is another MCD file, but in most cases the process will create a .QRT result file that WinQTLCart can use to graph QTL information. http://gaow.github.io/genetic-analysis-software/q/qtl-cartographer/

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WebWindows QTL Cartographer maps quantitative trait loci (QTL) in cross populations from inbred lines. WinQTLCart includes a powerful graphic tool for presenting mapping results … QTL Cartographer is a suite of programs to map quantitative traits using a map of … WebQuantitative trait locus (QTL) analysis was performed to identify the loci controlling these floral traits, using backcross recombinant inbred lines derived from a cross between Nipponbare and W630. A total of 11 significant QTLs were identified.

WebApr 11, 2016 · Windows QTL Cartographer 2.5 was used to identify QTLs by composite interval mapping method on the environment by environment basis of the 11 environments. The LOD threshold for declaring significant QTLs included the QTLs across environments calculated by a permutation test with the mapping step of 1.0 cM, five control markers, … WebSuppose, I got QTL positioned on 9.8 cM, and the left and right flanking marker positions are 2.5 cM and 14.6 cM. In between 2.5 cM and 14.6 cM, many markers are present. In this case, shall...

Web2007 N.C. State University, Bioinformatics Research Center I Windows QTL Cartographer 2.5 Table of Contents About Windows QTL Cartographer 4 WinQTLCart... QTL-cartographer. Mapping Quantitative Trait Loci with QTL Cartographer There are two stages to...les in a working directory under QTLCartWin. When you ran Rmap you set ... WinQTLCart. 2005 N ... WebSep 29, 2001 · QTL Cartographer2.5 software program was used to analyze marker-QTL associations using test statistics composite interval mapping calibrated at one thousand test permutations to calculate the...

WebWindows QTL Cartographer V2.5 WinQTLCart Installation Making sure you have the latest release If you already have a version of WinQTLCart on your PC: Open your version of …

WebComposite interval mapping and multiple interval mapping: procedures and guidelines for using Windows QTL Cartographer. Tremendous progress has been made in recent years … great blue heron ardeaWeb1.3 QTL 定位方法 QTL 定位分析使用 WinQTL Cartographer V. 2.5[13] 复合区间作图(CIM)和多标记联合分析。 CIM 法使用标准模型 6, 步长为 1 cM, 采用向前回归法搜寻 QTL 和公共因子, 窗口大小设为 10 cM, 最多 5 个高 P 值的背景标记作为协变量控制其遗传背景。 chopper bikes harley davidsonWebJun 1, 2024 · QTL analysis was performed by composite interval mapping (CIM) method using Windows QTL Cartographer 2.5 software (Wang et al. 2007) with a logarithm of … chopper bike with banana seatWebQTL Cartographer is a suite of programs to map quantitative traits using a map of molecular markers. Windows QTL Cartographer maps quantitative trait loci in cross populations … chopper blade whirlpool dishwasherWebJan 1, 1996 · QTL mapping was conducted by QTL Cartographer 2.5 (Basten et al. 1997) with the composite interval mapping method (Zeng 1994). The permutation test was run … chopper blender food processor usaWebDec 10, 2024 · To detect the QTL controlling seed set and number of sterile spikelets per spike in BC 1 populations, composite interval mapping with a 5-cM window and a maximum of 10 marker cofactors per model was carried out using the Windows QTL Cartographer version 2.5 (Wang et al., 2012). Tests were performed at 1-cM intervals, and cofactors … chopper bobber gas tanksWebSep 9, 2024 · The composite interval mapping (CIM) method in Windows QTL Cartographer 2.5 was used for QTL calling with the logarithm of odds (LOD) threshold of 3.0 (Wang et al., 2010). The percentage of the phenotypic variance explained by a QTL was indicated by the determination coefficient (R 2 %). Analysis of candidate genes in the target mapping … chopper bobber 125cc